J3_4V7E_039
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AC*GAUACCU*AGUCU
- Length
- 14 nucleotides
- Bulged bases
- 4V7E|1|Ac|C|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_039 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1596
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
4V7E|1|Ac|A|44
4V7E|1|Ac|C|45
*
4V7E|1|Ac|G|58
4V7E|1|Ac|A|59
4V7E|1|Ac|U|60
4V7E|1|Ac|A|61
4V7E|1|Ac|C|62
4V7E|1|Ac|C|63
4V7E|1|Ac|U|64
*
4V7E|1|Ac|A|96
4V7E|1|Ac|G|97
4V7E|1|Ac|U|98
4V7E|1|Ac|C|99
4V7E|1|Ac|U|100
Current chains
- Chain Ac
- 5.8S ribosomal RNA
Nearby chains
- Chain CX
- 60S ribosomal protein L23
- Chain Ch
- 60S ribosomal protein L29
- Chain Cj
- 60S ribosomal protein L37E
- Chain Cl
- 60S ribosomal protein L39E
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