J3_4V7I_011

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V7I|1|BA|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7I_011 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2618

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V7I|1|BA|C|826
4V7I|1|BA|U|827
4V7I|1|BA|U|828
4V7I|1|BA|G|829
*
4V7I|1|BA|C|857
4V7I|1|BA|G|858
4V7I|1|BA|G|859
4V7I|1|BA|A|860
4V7I|1|BA|G|861
*
4V7I|1|BA|C|868
4V7I|1|BA|G|869
4V7I|1|BA|U|870
4V7I|1|BA|U|871
4V7I|1|BA|A|872
4V7I|1|BA|A|873
4V7I|1|BA|G|874

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BH

30S ribosomal protein S8

Chain BU

30S ribosomal protein S21