3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
4V7I|1|A8|A|504, 4V7I|1|A8|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7I_022 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.2625
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V7I|1|A8|G|30
4V7I|1|A8|C|31
*
4V7I|1|A8|G|474
4V7I|1|A8|C|475
4V7I|1|A8|G|476
4V7I|1|A8|A|477
4V7I|1|A8|A|478
4V7I|1|A8|A|479
4V7I|1|A8|A|480
4V7I|1|A8|G|481
4V7I|1|A8|A|482
4V7I|1|A8|A|483
4V7I|1|A8|C|484
*
4V7I|1|A8|G|496
4V7I|1|A8|A|497
4V7I|1|A8|G|498
4V7I|1|A8|U|499
4V7I|1|A8|G|500
4V7I|1|A8|A|501
4V7I|1|A8|A|502
4V7I|1|A8|A|503
4V7I|1|A8|A|504
4V7I|1|A8|A|505
4V7I|1|A8|G|506
4V7I|1|A8|A|507
4V7I|1|A8|A|508
4V7I|1|A8|C|509
4V7I|1|A8|C|510

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain AA
PREPROTEIN TRANSLOCASE SECY SUBUNIT
Chain AQ
50S ribosomal protein L20
Chain AS
50S ribosomal protein L22
Chain AU
50S ribosomal protein L24

Coloring options:


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