J3_4V7I_032

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

4V7I|1|BA|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7I_032 not in the Motif Atlas

Homologous match to J3_5J7L_051

Geometric discrepancy: 0.2427

The information below is about J3_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V7I|1|BA|C|586
4V7I|1|BA|G|587
4V7I|1|BA|G|588
*
4V7I|1|BA|C|651
4V7I|1|BA|U|652
4V7I|1|BA|U|653
4V7I|1|BA|G|654
4V7I|1|BA|A|655
*
4V7I|1|BA|U|751
4V7I|1|BA|G|752
4V7I|1|BA|A|753
4V7I|1|BA|C|754
4V7I|1|BA|G|755

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BL

30S ribosomal protein S12

Chain BO

30S ribosomal protein S15

Chain BQ

30S ribosomal protein S17