J3_4V7J_034

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V7J|1|AA|U|504, 4V7J|1|AA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7J_034 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2274

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V7J|1|AA|G|30
4V7J|1|AA|C|31
*
4V7J|1|AA|G|474
4V7J|1|AA|U|475
4V7J|1|AA|G|476
4V7J|1|AA|A|477
4V7J|1|AA|A|478
4V7J|1|AA|A|479
4V7J|1|AA|A|480
4V7J|1|AA|G|481
4V7J|1|AA|A|482
4V7J|1|AA|A|483
4V7J|1|AA|C|484
*
4V7J|1|AA|G|496
4V7J|1|AA|A|497
4V7J|1|AA|G|498
4V7J|1|AA|U|499
4V7J|1|AA|G|500
4V7J|1|AA|A|501
4V7J|1|AA|A|502
4V7J|1|AA|A|503
4V7J|1|AA|U|504
4V7J|1|AA|A|505
4V7J|1|AA|G|506
4V7J|1|AA|A|507
4V7J|1|AA|G|508
4V7J|1|AA|C|509
4V7J|1|AA|C|510

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AU

50S ribosomal protein L20

Chain AW

50S ribosomal protein L22

Chain AY

50S ribosomal protein L24