J3_4V7J_074

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V7J|1|Aa|U|1212, 4V7J|1|Aa|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7J_074 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1306

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V7J|1|Aa|C|990
4V7J|1|Aa|U|991
4V7J|1|Aa|U|992
4V7J|1|Aa|G|993
4V7J|1|Aa|A|994
4V7J|1|Aa|C|995
4V7J|1|Aa|A|996
4V7J|1|Aa|U|997
*
4V7J|1|Aa|A|1044
4V7J|1|Aa|C|1045
4V7J|1|Aa|A|1046
4V7J|1|Aa|G|1047
*
4V7J|1|Aa|C|1210
4V7J|1|Aa|U|1211
4V7J|1|Aa|U|1212
4V7J|1|Aa|A|1213
4V7J|1|Aa|C|1214
4V7J|1|Aa|G|1215

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain An

30S ribosomal protein S14 type Z

Chain Ay

Toxin relE

Chain BA

Large subunit ribosomal RNA; LSU rRNA