J3_4V7M_035

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V7M|1|AA|C|48, 4V7M|1|AA|A|50, 4V7M|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7M_035 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0844

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7M|1|AA|G|46
4V7M|1|AA|C|47
4V7M|1|AA|C|48
4V7M|1|AA|U|49
4V7M|1|AA|A|50
4V7M|1|AA|A|51
4V7M|1|AA|G|52
*
4V7M|1|AA|U|359
4V7M|1|AA|A|360
4V7M|1|AA|G|361
4V7M|1|AA|G|362
4V7M|1|AA|A|363
4V7M|1|AA|A|364
4V7M|1|AA|U|365
4V7M|1|AA|C|366
4V7M|1|AA|U|367
*
4V7M|1|AA|A|393
4V7M|1|AA|G|394
4V7M|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16