J3_4V7M_061

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V7M|1|DA|U|504, 4V7M|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7M_061 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2367

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V7M|1|DA|G|30
4V7M|1|DA|C|31
*
4V7M|1|DA|G|474
4V7M|1|DA|U|475
4V7M|1|DA|G|476
4V7M|1|DA|A|477
4V7M|1|DA|A|478
4V7M|1|DA|A|479
4V7M|1|DA|A|480
4V7M|1|DA|G|481
4V7M|1|DA|A|482
4V7M|1|DA|A|483
4V7M|1|DA|C|484
*
4V7M|1|DA|G|496
4V7M|1|DA|A|497
4V7M|1|DA|G|498
4V7M|1|DA|U|499
4V7M|1|DA|G|500
4V7M|1|DA|A|501
4V7M|1|DA|A|502
4V7M|1|DA|A|503
4V7M|1|DA|U|504
4V7M|1|DA|A|505
4V7M|1|DA|G|506
4V7M|1|DA|A|507
4V7M|1|DA|G|508
4V7M|1|DA|C|509
4V7M|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24