J3_4V7R_007
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 4V7R|1|A1|G|1445, 4V7R|1|A1|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7R_007 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.5838
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V7R|1|A1|C|1215
4V7R|1|A1|C|1216
4V7R|1|A1|A|1217
4V7R|1|A1|G|1218
4V7R|1|A1|A|1219
4V7R|1|A1|C|1220
*
4V7R|1|A1|G|1263
4V7R|1|A1|G|1264
4V7R|1|A1|G|1265
4V7R|1|A1|U|1266
4V7R|1|A1|G|1267
*
4V7R|1|A1|U|1442
4V7R|1|A1|U|1443
4V7R|1|A1|A|1444
4V7R|1|A1|G|1445
4V7R|1|A1|A|1446
4V7R|1|A1|C|1447
4V7R|1|A1|G|1448
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain AK
- 40S ribosomal protein S17-A
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