3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CCAGAC*GGGUG*UUAGACG
Length
18 nucleotides
Bulged bases
4V7R|1|A1|G|1445, 4V7R|1|A1|C|1447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7R_007 not in the Motif Atlas
Homologous match to J3_4V88_038
Geometric discrepancy: 0.5838
The information below is about J3_4V88_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_75993.1
Basepair signature
cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

4V7R|1|A1|C|1215
4V7R|1|A1|C|1216
4V7R|1|A1|A|1217
4V7R|1|A1|G|1218
4V7R|1|A1|A|1219
4V7R|1|A1|C|1220
*
4V7R|1|A1|G|1263
4V7R|1|A1|G|1264
4V7R|1|A1|G|1265
4V7R|1|A1|U|1266
4V7R|1|A1|G|1267
*
4V7R|1|A1|U|1442
4V7R|1|A1|U|1443
4V7R|1|A1|A|1444
4V7R|1|A1|G|1445
4V7R|1|A1|A|1446
4V7R|1|A1|C|1447
4V7R|1|A1|G|1448

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain AK
40S ribosomal protein S17-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3035 s