J3_4V7R_039

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

4V7R|1|D1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7R_039 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1565

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4V7R|1|D1|U|1479
4V7R|1|D1|G|1480
4V7R|1|D1|A|1481
4V7R|1|D1|A|1482
4V7R|1|D1|G|1483
4V7R|1|D1|U|1484
4V7R|1|D1|G|1485
*
4V7R|1|D1|C|1857
4V7R|1|D1|A|1858
4V7R|1|D1|A|1859
*
4V7R|1|D1|U|1871
4V7R|1|D1|C|1872
4V7R|1|D1|U|1873
4V7R|1|D1|A|1874

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DS

60S ribosomal protein L19