J3_4V7R_040

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAAA*UGAUAAC*GUC

Length

14 nucleotides

Bulged bases

4V7R|1|D1|U|1840, 4V7R|1|D1|A|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7R_040 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1988

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V7R|1|D1|G|1488
4V7R|1|D1|A|1489
4V7R|1|D1|A|1490
4V7R|1|D1|A|1491
*
4V7R|1|D1|U|1837
4V7R|1|D1|G|1838
4V7R|1|D1|A|1839
4V7R|1|D1|U|1840
4V7R|1|D1|A|1841
4V7R|1|D1|A|1842
4V7R|1|D1|C|1843
*
4V7R|1|D1|G|1852
4V7R|1|D1|U|1853
4V7R|1|D1|C|1854

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain D3

5.8S ribosomal RNA; 5.8S rRNA

Chain Dd

60S ribosomal protein L37-A

Chain De

60S ribosomal protein L39