J3_4V7R_044

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4V7R|1|D1|A|2887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7R_044 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.2636

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

4V7R|1|D1|U|2886
4V7R|1|D1|A|2887
4V7R|1|D1|U|2888
4V7R|1|D1|C|2889
*
4V7R|1|D1|G|2914
4V7R|1|D1|U|2915
4V7R|1|D1|U|2916
*
4V7R|1|D1|A|2930
4V7R|1|D1|C|2931
4V7R|1|D1|U|2932
4V7R|1|D1|A|2933
4V7R|1|D1|A|2934
4V7R|1|D1|U|2935
4V7R|1|D1|A|2936

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DC

60S ribosomal protein L3

Chain DU

60S ribosomal protein L23