J3_4V8E_064

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V8E|1|CA|A|1431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_064 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1363

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V8E|1|CA|G|1391
4V8E|1|CA|C|1392
4V8E|1|CA|G|1393
4V8E|1|CA|G|1394
4V8E|1|CA|G|1395
4V8E|1|CA|A|1396
4V8E|1|CA|C|1397
*
4V8E|1|CA|G|1428
4V8E|1|CA|G|1429
4V8E|1|CA|C|1430
4V8E|1|CA|A|1431
4V8E|1|CA|G|1432
*
4V8E|1|CA|C|1449
4V8E|1|CA|C|1450

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CT

50S ribosomal protein L23