J3_4V8E_065

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_065 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.072

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|G|1471
4V8E|1|CA|G|1472
4V8E|1|CA|G|1473
4V8E|1|CA|A|1474
4V8E|1|CA|C|1475
4V8E|1|CA|G|1476
*
4V8E|1|CA|C|1612
4V8E|1|CA|C|1613
*
4V8E|1|CA|G|1616
4V8E|1|CA|A|1617
4V8E|1|CA|A|1618
4V8E|1|CA|A|1619
4V8E|1|CA|A|1620
4V8E|1|CA|G|1621
4V8E|1|CA|C|1622

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2