J3_4V8E_067

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4V8E|1|CA|G|2844, 4V8E|1|CA|A|2846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_067 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1376

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|C|2825
4V8E|1|CA|C|2826
*
4V8E|1|CA|G|2842
4V8E|1|CA|U|2843
4V8E|1|CA|G|2844
4V8E|1|CA|G|2845
4V8E|1|CA|A|2846
4V8E|1|CA|U|2847
*
4V8E|1|CA|A|2893
4V8E|1|CA|A|2894
4V8E|1|CA|U|2895
4V8E|1|CA|C|2896
4V8E|1|CA|G|2897

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3