J3_4V8J_001

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V8J|1|AA|U|848

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0878

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V8J|1|AA|C|809
4V8J|1|AA|U|810
4V8J|1|AA|A|811
4V8J|1|AA|G|812
*
4V8J|1|AA|C|834
4V8J|1|AA|G|835
4V8J|1|AA|A|836
4V8J|1|AA|A|837
4V8J|1|AA|G|838
*
4V8J|1|AA|C|845
4V8J|1|AA|G|846
4V8J|1|AA|U|847
4V8J|1|AA|U|848
4V8J|1|AA|A|849
4V8J|1|AA|A|850
4V8J|1|AA|G|851

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8