J3_4V8J_008

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V8J|1|AA|U|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_008 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1242

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V8J|1|AA|C|1218
4V8J|1|AA|A|1219
4V8J|1|AA|A|1220
4V8J|1|AA|U|1221
4V8J|1|AA|G|1222
*
4V8J|1|AA|C|1277
4V8J|1|AA|C|1278
4V8J|1|AA|C|1279
4V8J|1|AA|A|1280
4V8J|1|AA|G|1281
4V8J|1|AA|U|1282
4V8J|1|AA|U|1283
4V8J|1|AA|C|1284
*
4V8J|1|AA|G|1315
4V8J|1|AA|C|1316
4V8J|1|AA|C|1317
4V8J|1|AA|G|1318

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein THX