J3_4V8J_031

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V8J|1|AA|C|48, 4V8J|1|AA|A|50, 4V8J|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_031 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1031

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8J|1|AA|G|46
4V8J|1|AA|C|47
4V8J|1|AA|C|48
4V8J|1|AA|U|49
4V8J|1|AA|A|50
4V8J|1|AA|A|51
4V8J|1|AA|G|52
*
4V8J|1|AA|U|354
4V8J|1|AA|A|355
4V8J|1|AA|G|356
4V8J|1|AA|G|357
4V8J|1|AA|A|358
4V8J|1|AA|A|359
4V8J|1|AA|U|360
4V8J|1|AA|C|361
4V8J|1|AA|U|362
*
4V8J|1|AA|A|388
4V8J|1|AA|G|389
4V8J|1|AA|C|390

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9