J3_4V8J_036

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V8J|1|AA|C|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_036 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1418

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V8J|1|AA|C|967
4V8J|1|AA|U|968
4V8J|1|AA|U|969
4V8J|1|AA|G|970
4V8J|1|AA|A|971
4V8J|1|AA|C|972
4V8J|1|AA|A|973
4V8J|1|AA|U|974
*
4V8J|1|AA|A|1026
4V8J|1|AA|C|1027
4V8J|1|AA|A|1028
4V8J|1|AA|G|1029
*
4V8J|1|AA|C|1191
4V8J|1|AA|U|1192
4V8J|1|AA|U|1193
4V8J|1|AA|A|1194
4V8J|1|AA|C|1195
4V8J|1|AA|G|1196

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14

Chain DA

Large subunit ribosomal RNA; LSU rRNA