J3_4V8P_019
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 4V8P|1|D1|A|842, 4V8P|1|D1|G|949
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_019 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.0667
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|D1|U|839
4V8P|1|D1|G|840
4V8P|1|D1|A|841
4V8P|1|D1|A|842
4V8P|1|D1|C|843
4V8P|1|D1|U|844
4V8P|1|D1|A|845
*
4V8P|1|D1|U|930
4V8P|1|D1|A|931
4V8P|1|D1|G|932
*
4V8P|1|D1|C|948
4V8P|1|D1|G|949
4V8P|1|D1|A|950
4V8P|1|D1|A|951
Current chains
- Chain D1
- 26S RRNA
Nearby chains
- Chain CA
- RPL8
- Chain CC
- RPL4
- Chain CL
- RIBOSOMAL PROTEIN L15
- Chain DA
- RIBOSOMAL PROTEIN L37
- Chain DB
- RPL39
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