J3_4V8P_035

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4V8P|1|F1|A|1508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8P_035 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0817

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4V8P|1|F1|C|1505
4V8P|1|F1|G|1506
4V8P|1|F1|A|1507
4V8P|1|F1|A|1508
4V8P|1|F1|G|1509
4V8P|1|F1|U|1510
4V8P|1|F1|G|1511
*
4V8P|1|F1|C|1881
4V8P|1|F1|A|1882
4V8P|1|F1|A|1883
*
4V8P|1|F1|U|1895
4V8P|1|F1|C|1896
4V8P|1|F1|U|1897
4V8P|1|F1|G|1898

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EO

RPL19

Chain FL

RPL34