J3_4V8P_050
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAAG*CCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 4V8P|1|H1|U|1864, 4V8P|1|H1|A|1865
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_050 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0947
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8P|1|H1|G|1514
4V8P|1|H1|A|1515
4V8P|1|H1|A|1516
4V8P|1|H1|G|1517
*
4V8P|1|H1|C|1861
4V8P|1|H1|C|1862
4V8P|1|H1|A|1863
4V8P|1|H1|U|1864
4V8P|1|H1|A|1865
4V8P|1|H1|A|1866
4V8P|1|H1|C|1867
*
4V8P|1|H1|G|1876
4V8P|1|H1|U|1877
4V8P|1|H1|C|1878
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain HA
- RIBOSOMAL PROTEIN L37
- Chain HB
- RPL39
- Chain HL
- RPL34
Coloring options: