J3_4V8P_063
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_063 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1315
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|A1|U|1552
4V8P|1|A1|C|1553
4V8P|1|A1|G|1554
4V8P|1|A1|A|1555
4V8P|1|A1|U|1556
4V8P|1|A1|C|1557
*
4V8P|1|A1|G|1616
4V8P|1|A1|G|1617
4V8P|1|A1|A|1618
4V8P|1|A1|A|1619
4V8P|1|A1|U|1620
*
4V8P|1|A1|A|1637
4V8P|1|A1|A|1638
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AB
- RPL39
- Chain AL
- RPL34
- Chain AP
- RPL38
- Chain B2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BR
- RPL23A
Coloring options: