J3_4V8T_002
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 4V8T|1|5|A|817, 4V8T|1|5|G|924
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8T_002 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.047
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8T|1|5|U|814
4V8T|1|5|G|815
4V8T|1|5|A|816
4V8T|1|5|A|817
4V8T|1|5|C|818
4V8T|1|5|U|819
4V8T|1|5|A|820
*
4V8T|1|5|U|905
4V8T|1|5|A|906
4V8T|1|5|G|907
*
4V8T|1|5|C|923
4V8T|1|5|G|924
4V8T|1|5|A|925
4V8T|1|5|A|926
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain N
- 60S RIBOSOMAL PROTEIN L15-A
- Chain j
- 60S RIBOSOMAL PROTEIN L37-A
- Chain l
- 60S RIBOSOMAL PROTEIN L39
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