J3_4V8T_005
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 4V8T|1|5|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8T_005 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.0617
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V8T|1|5|U|1479
4V8T|1|5|G|1480
4V8T|1|5|A|1481
4V8T|1|5|A|1482
4V8T|1|5|G|1483
4V8T|1|5|U|1484
4V8T|1|5|G|1485
*
4V8T|1|5|C|1857
4V8T|1|5|A|1858
4V8T|1|5|A|1859
*
4V8T|1|5|U|1871
4V8T|1|5|C|1872
4V8T|1|5|U|1873
4V8T|1|5|A|1874
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain R
- 60S RIBOSOMAL PROTEIN L19-B
- Chain g
- 60S RIBOSOMAL PROTEIN L34-A
Coloring options: