J3_4V8T_008
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 4V8T|1|5|G|2549, 4V8T|1|5|U|2550, 4V8T|1|5|U|2551, 4V8T|1|5|A|2554, 4V8T|1|5|U|2558, 4V8T|1|5|U|2559, 4V8T|1|5|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8T_008 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.1124
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|5|A|2529
4V8T|1|5|G|2530
4V8T|1|5|C|2531
4V8T|1|5|U|2532
*
4V8T|1|5|A|2547
4V8T|1|5|C|2548
4V8T|1|5|G|2549
4V8T|1|5|U|2550
4V8T|1|5|U|2551
4V8T|1|5|C|2552
4V8T|1|5|U|2553
4V8T|1|5|A|2554
4V8T|1|5|G|2555
4V8T|1|5|C|2556
4V8T|1|5|A|2557
4V8T|1|5|U|2558
4V8T|1|5|U|2559
4V8T|1|5|C|2560
4V8T|1|5|A|2561
4V8T|1|5|A|2562
4V8T|1|5|G|2563
*
4V8T|1|5|U|2578
4V8T|1|5|G|2579
4V8T|1|5|A|2580
4V8T|1|5|U|2581
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain G
- 60S RIBOSOMAL PROTEIN L8-A
- Chain X
- 60S RIBOSOMAL PROTEIN L25
- Chain Z
- 60S RIBOSOMAL PROTEIN L27-A
- Chain c
- 60S RIBOSOMAL PROTEIN L32
- Chain g
- 60S RIBOSOMAL PROTEIN L34-A
- Chain p
- 60S RIBOSOMAL PROTEIN L43-A
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