J3_4V8T_009
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 4V8T|1|5|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8T_009 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0528
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8T|1|5|C|2664
4V8T|1|5|U|2665
4V8T|1|5|C|2666
*
4V8T|1|5|G|2690
4V8T|1|5|A|2691
4V8T|1|5|A|2692
*
4V8T|1|5|U|2701
4V8T|1|5|A|2702
4V8T|1|5|A|2703
4V8T|1|5|A|2704
4V8T|1|5|A|2705
4V8T|1|5|G|2706
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S RIBOSOMAL PROTEIN L5
- Chain J
- 60S RIBOSOMAL PROTEIN L11-B
- Chain T
- 60S RIBOSOMAL PROTEIN L21-A
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