J3_4V8T_010
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 4V8T|1|5|A|2887, 4V8T|1|5|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8T_010 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0525
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|5|U|2886
4V8T|1|5|A|2887
4V8T|1|5|U|2888
4V8T|1|5|C|2889
*
4V8T|1|5|G|2914
4V8T|1|5|U|2915
4V8T|1|5|U|2916
*
4V8T|1|5|A|2930
4V8T|1|5|C|2931
4V8T|1|5|U|2932
4V8T|1|5|A|2933
4V8T|1|5|A|2934
4V8T|1|5|U|2935
4V8T|1|5|A|2936
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain O
- 60S RIBOSOMAL PROTEIN L16-A
- Chain V
- 60S RIBOSOMAL PROTEIN L23-A
Coloring options: