J3_4V8Z_001
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_001 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.0716
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B2|A|760
4V8Z|1|B2|G|761
4V8Z|1|B2|A|762
4V8Z|1|B2|G|763
*
4V8Z|1|B2|C|773
4V8Z|1|B2|A|774
4V8Z|1|B2|G|775
*
4V8Z|1|B2|U|785
4V8Z|1|B2|C|786
4V8Z|1|B2|G|787
4V8Z|1|B2|A|788
4V8Z|1|B2|A|789
4V8Z|1|B2|U|790
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S RIBOSOMAL PROTEIN S4-A
- Chain AJ
- 40S RIBOSOMAL PROTEIN S9-A
- Chain AY
- 40S RIBOSOMAL PROTEIN S24-A
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