J3_4V8Z_012

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4V8Z|1|B5|A|817, 4V8Z|1|B5|G|924

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Z_012 not in the Motif Atlas

Homologous match to J3_5TBW_004

Geometric discrepancy: 0.0469

The information below is about J3_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|U|814
4V8Z|1|B5|G|815
4V8Z|1|B5|A|816
4V8Z|1|B5|A|817
4V8Z|1|B5|C|818
4V8Z|1|B5|U|819
4V8Z|1|B5|A|820
*
4V8Z|1|B5|U|905
4V8Z|1|B5|A|906
4V8Z|1|B5|G|907
*
4V8Z|1|B5|C|923
4V8Z|1|B5|G|924
4V8Z|1|B5|A|925
4V8Z|1|B5|A|926

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain BN

60S RIBOSOMAL PROTEIN L15-A

Chain Bj

60S RIBOSOMAL PROTEIN L37-A