J3_4V8Z_014

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

4V8Z|1|B5|A|1482

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Z_014 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0617

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4V8Z|1|B5|U|1479
4V8Z|1|B5|G|1480
4V8Z|1|B5|A|1481
4V8Z|1|B5|A|1482
4V8Z|1|B5|G|1483
4V8Z|1|B5|U|1484
4V8Z|1|B5|G|1485
*
4V8Z|1|B5|C|1857
4V8Z|1|B5|A|1858
4V8Z|1|B5|A|1859
*
4V8Z|1|B5|U|1871
4V8Z|1|B5|C|1872
4V8Z|1|B5|U|1873
4V8Z|1|B5|A|1874

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19-B

Chain Bg

60S RIBOSOMAL PROTEIN L34-A