J3_4V8Z_015
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 4V8Z|1|B5|U|1840, 4V8Z|1|B5|A|1841
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_015 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0528
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B5|G|1488
4V8Z|1|B5|A|1489
4V8Z|1|B5|A|1490
4V8Z|1|B5|A|1491
*
4V8Z|1|B5|U|1837
4V8Z|1|B5|G|1838
4V8Z|1|B5|A|1839
4V8Z|1|B5|U|1840
4V8Z|1|B5|A|1841
4V8Z|1|B5|A|1842
4V8Z|1|B5|C|1843
*
4V8Z|1|B5|G|1852
4V8Z|1|B5|U|1853
4V8Z|1|B5|C|1854
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34-A
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: