J3_4V8Z_019

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4V8Z|1|B5|A|2887, 4V8Z|1|B5|U|2888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Z_019 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.082

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

4V8Z|1|B5|U|2886
4V8Z|1|B5|A|2887
4V8Z|1|B5|U|2888
4V8Z|1|B5|C|2889
*
4V8Z|1|B5|G|2914
4V8Z|1|B5|U|2915
4V8Z|1|B5|U|2916
*
4V8Z|1|B5|A|2930
4V8Z|1|B5|C|2931
4V8Z|1|B5|U|2932
4V8Z|1|B5|A|2933
4V8Z|1|B5|A|2934
4V8Z|1|B5|U|2935
4V8Z|1|B5|A|2936

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BO

60S RIBOSOMAL PROTEIN L16-A

Chain BV

60S RIBOSOMAL PROTEIN L23-A