J3_4V8Z_029

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

4V8Z|1|B5|U|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Z_029 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.0523

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4V8Z|1|B5|C|185
4V8Z|1|B5|U|186
4V8Z|1|B5|A|187
4V8Z|1|B5|U|188
4V8Z|1|B5|G|189
*
4V8Z|1|B5|C|205
4V8Z|1|B5|G|206
4V8Z|1|B5|U|207
4V8Z|1|B5|C|208
4V8Z|1|B5|A|209
4V8Z|1|B5|U|210
4V8Z|1|B5|A|211
4V8Z|1|B5|G|212
4V8Z|1|B5|A|213
4V8Z|1|B5|G|214
*
4V8Z|1|B5|C|226
4V8Z|1|B5|G|227
4V8Z|1|B5|U|228
4V8Z|1|B5|G|229
4V8Z|1|B5|U|230
4V8Z|1|B5|G|231

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S RIBOSOMAL PROTEIN L4-A

Chain BY

60S RIBOSOMAL PROTEIN L26-A