3D structure

PDB id
4V91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
4V91|1|1|A|817, 4V91|1|1|G|924
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V91_002 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.0774
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

4V91|1|1|U|814
4V91|1|1|G|815
4V91|1|1|A|816
4V91|1|1|A|817
4V91|1|1|C|818
4V91|1|1|U|819
4V91|1|1|A|820
*
4V91|1|1|U|905
4V91|1|1|A|906
4V91|1|1|G|907
*
4V91|1|1|C|923
4V91|1|1|G|924
4V91|1|1|A|925
4V91|1|1|A|926

Current chains

Chain 1
25S RRNA

Nearby chains

Chain A
UL2
Chain N
EL15
Chain j
EL37

Coloring options:


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