J3_4V91_030
3D structure
- PDB id
- 4V91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 4V91|1|1|G|2549, 4V91|1|1|U|2550, 4V91|1|1|U|2551, 4V91|1|1|A|2554, 4V91|1|1|U|2558, 4V91|1|1|U|2559, 4V91|1|1|C|2560
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V91_030 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.1787
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V91|1|1|A|2529
4V91|1|1|G|2530
4V91|1|1|C|2531
4V91|1|1|U|2532
*
4V91|1|1|A|2547
4V91|1|1|C|2548
4V91|1|1|G|2549
4V91|1|1|U|2550
4V91|1|1|U|2551
4V91|1|1|C|2552
4V91|1|1|U|2553
4V91|1|1|A|2554
4V91|1|1|G|2555
4V91|1|1|C|2556
4V91|1|1|A|2557
4V91|1|1|U|2558
4V91|1|1|U|2559
4V91|1|1|C|2560
4V91|1|1|A|2561
4V91|1|1|A|2562
4V91|1|1|G|2563
*
4V91|1|1|U|2578
4V91|1|1|G|2579
4V91|1|1|A|2580
4V91|1|1|U|2581
Current chains
- Chain 1
- 25S RRNA
Nearby chains
- Chain A
- UL2
- Chain G
- EL8
- Chain X
- UL23
- Chain Z
- EL27
- Chain c
- EL30
- Chain g
- EL34
- Chain p
- EL43
Coloring options: