J3_4V9A_039

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*CGCCGAUGG*CAG

Length

14 nucleotides

Bulged bases

4V9A|1|AA|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9A_039 not in the Motif Atlas

Homologous match to J3_4LFB_012

Geometric discrepancy: 0.1036

The information below is about J3_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.4

Basepair signature

cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9A|1|AA|U|672
4V9A|1|AA|G|673
*
4V9A|1|AA|C|717
4V9A|1|AA|G|718
4V9A|1|AA|C|719
4V9A|1|AA|C|720
4V9A|1|AA|G|721
4V9A|1|AA|A|722
4V9A|1|AA|U|723
4V9A|1|AA|G|724
4V9A|1|AA|G|725
*
4V9A|1|AA|C|732
4V9A|1|AA|A|733
4V9A|1|AA|G|734

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S6

Chain AN

30S RIBOSOMAL PROTEIN S11

Chain AR

30S RIBOSOMAL PROTEIN S15

Chain AU

30S RIBOSOMAL PROTEIN S18