J3_4V9A_040

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V9A|1|AA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9A_040 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1539

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V9A|1|AA|C|990
4V9A|1|AA|U|991
4V9A|1|AA|U|992
4V9A|1|AA|G|993
4V9A|1|AA|A|994
4V9A|1|AA|C|995
4V9A|1|AA|A|996
4V9A|1|AA|U|997
*
4V9A|1|AA|A|1044
4V9A|1|AA|C|1045
4V9A|1|AA|A|1046
4V9A|1|AA|G|1047
*
4V9A|1|AA|C|1210
4V9A|1|AA|U|1211
4V9A|1|AA|U|1212
4V9A|1|AA|A|1213
4V9A|1|AA|C|1214
4V9A|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S14

Chain DA

Large subunit ribosomal RNA; LSU rRNA