J3_4V9C_001

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9C|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1294

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V9C|1|AA|C|826
4V9C|1|AA|U|827
4V9C|1|AA|U|828
4V9C|1|AA|G|829
*
4V9C|1|AA|C|857
4V9C|1|AA|G|858
4V9C|1|AA|G|859
4V9C|1|AA|A|860
4V9C|1|AA|G|861
*
4V9C|1|AA|C|868
4V9C|1|AA|G|869
4V9C|1|AA|U|870
4V9C|1|AA|U|871
4V9C|1|AA|A|872
4V9C|1|AA|A|873
4V9C|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21