J3_4V9C_012

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_012 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0904

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9C|1|BA|C|1298
4V9C|1|BA|G|1299
4V9C|1|BA|G|1300
4V9C|1|BA|A|1301
4V9C|1|BA|A|1302
4V9C|1|BA|G|1303
*
4V9C|1|BA|C|1625
4V9C|1|BA|A|1626
4V9C|1|BA|G|1627
*
4V9C|1|BA|C|1639
4V9C|1|BA|A|1640
4V9C|1|BA|A|1641
4V9C|1|BA|G|1642

Current chains

Chain BA

23S ribosomal RNA

Nearby chains