J3_4V9I_001

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9I|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0627

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9I|1|AA|C|826
4V9I|1|AA|U|827
4V9I|1|AA|A|828
4V9I|1|AA|G|829
*
4V9I|1|AA|C|857
4V9I|1|AA|G|858
4V9I|1|AA|A|859
4V9I|1|AA|A|860
4V9I|1|AA|G|861
*
4V9I|1|AA|C|868
4V9I|1|AA|G|869
4V9I|1|AA|U|870
4V9I|1|AA|U|871
4V9I|1|AA|A|872
4V9I|1|AA|A|873
4V9I|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S Ribosomal protein S2

Chain AH

30S Ribosomal protein S8