J3_4V9I_016

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9I|1|CA|U|849, 4V9I|1|CA|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_016 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0712

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9I|1|CA|C|810
4V9I|1|CA|U|811
4V9I|1|CA|A|812
4V9I|1|CA|G|813
*
4V9I|1|CA|C|835
4V9I|1|CA|G|836
4V9I|1|CA|A|837
4V9I|1|CA|A|838
4V9I|1|CA|G|839
*
4V9I|1|CA|C|846
4V9I|1|CA|G|847
4V9I|1|CA|U|848
4V9I|1|CA|U|849
4V9I|1|CA|A|850
4V9I|1|CA|A|851
4V9I|1|CA|G|852

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal protein S2

Chain CH

30S Ribosomal protein S8