J3_4V9I_018
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_018 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1142
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V9I|1|CA|U|921
4V9I|1|CA|G|922
4V9I|1|CA|G|923
4V9I|1|CA|A|924
*
4V9I|1|CA|U|1217
4V9I|1|CA|A|1218
4V9I|1|CA|C|1219
*
4V9I|1|CA|G|1319
4V9I|1|CA|G|1320
4V9I|1|CA|A|1321
4V9I|1|CA|A|1322
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CI
- 30S Ribosomal protein S9
- Chain CM
- 30S Ribosomal protein S13
- Chain CU
- 30S Ribosomal protein THX
- Chain CV
- Transfer RNA; tRNA
- Chain CW
- Transfer RNA; tRNA
Coloring options: