J3_4V9I_023

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V9I|1|CA|U|1222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_023 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.095

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9I|1|CA|C|1219
4V9I|1|CA|A|1220
4V9I|1|CA|A|1221
4V9I|1|CA|U|1222
4V9I|1|CA|G|1223
*
4V9I|1|CA|C|1278
4V9I|1|CA|C|1279
4V9I|1|CA|C|1280
4V9I|1|CA|A|1281
4V9I|1|CA|G|1282
4V9I|1|CA|U|1283
4V9I|1|CA|U|1284
4V9I|1|CA|C|1285
*
4V9I|1|CA|G|1316
4V9I|1|CA|C|1317
4V9I|1|CA|C|1318
4V9I|1|CA|G|1319

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal protein S7

Chain CM

30S Ribosomal protein S13

Chain CU

30S Ribosomal protein THX