J3_4V9I_047
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 4V9I|1|BA|G|2842, 4V9I|1|BA|A|2844
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_047 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1287
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V9I|1|BA|C|2823
4V9I|1|BA|C|2824
*
4V9I|1|BA|G|2840
4V9I|1|BA|U|2841
4V9I|1|BA|G|2842
4V9I|1|BA|G|2843
4V9I|1|BA|A|2844
4V9I|1|BA|U|2845
*
4V9I|1|BA|A|2891
4V9I|1|BA|A|2892
4V9I|1|BA|U|2893
4V9I|1|BA|C|2894
4V9I|1|BA|G|2895
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BR
- 50S ribosomal protein L17
- Chain BT
- 50S ribosomal protein L19
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