J3_4V9I_059

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V9I|1|DA|C|33, 4V9I|1|DA|U|473, 4V9I|1|DA|C|481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_059 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.1117

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V9I|1|DA|C|31
4V9I|1|DA|U|32
4V9I|1|DA|C|33
4V9I|1|DA|G|34
*
4V9I|1|DA|C|470
4V9I|1|DA|G|471
4V9I|1|DA|A|472
4V9I|1|DA|U|473
4V9I|1|DA|A|474
4V9I|1|DA|G|475
4V9I|1|DA|C|476
4V9I|1|DA|G|477
4V9I|1|DA|C|478
4V9I|1|DA|A|479
4V9I|1|DA|C|480
4V9I|1|DA|C|481
4V9I|1|DA|A|482
4V9I|1|DA|G|483
4V9I|1|DA|U|484
4V9I|1|DA|A|485
4V9I|1|DA|C|486
*
4V9I|1|DA|G|493
4V9I|1|DA|G|494
4V9I|1|DA|A|495
4V9I|1|DA|A|496
4V9I|1|DA|A|497
4V9I|1|DA|G|498

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DF

50S ribosomal protein L4

Chain DU

50S ribosomal protein L20

Chain DX

50S ribosomal protein L23