J3_4V9L_039

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V9L|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9L_039 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2099

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V9L|1|AA|C|990
4V9L|1|AA|U|991
4V9L|1|AA|U|992
4V9L|1|AA|G|993
4V9L|1|AA|A|994
4V9L|1|AA|C|995
4V9L|1|AA|A|996
4V9L|1|AA|U|997
*
4V9L|1|AA|A|1044
4V9L|1|AA|C|1045
4V9L|1|AA|A|1046
4V9L|1|AA|G|1047
*
4V9L|1|AA|C|1210
4V9L|1|AA|U|1211
4V9L|1|AA|U|1212
4V9L|1|AA|A|1213
4V9L|1|AA|C|1214
4V9L|1|AA|G|1215

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AN

30S ribosomal protein S14 type Z

Chain AY

Elongation factor G