J3_4W21_005

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4W21|1|5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W21_005 not in the Motif Atlas

Geometric match to J3_8CRE_013

Geometric discrepancy: 0.1696

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4W21|1|5|C|2393
4W21|1|5|G|2394
4W21|1|5|A|2395
4W21|1|5|A|2396
4W21|1|5|G|2397
4W21|1|5|U|2398
4W21|1|5|G|2399
*
4W21|1|5|C|2805
4W21|1|5|A|2806
4W21|1|5|A|2807
*
4W21|1|5|U|2819
4W21|1|5|C|2820
4W21|1|5|U|2821
4W21|1|5|G|2822

Current chains

Chain 5

28S ribosomal RNA

Nearby chains