J3_4W21_012

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W21_012 not in the Motif Atlas

Geometric match to J3_8CRE_005

Geometric discrepancy: 0.1528

The information below is about J3_8CRE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4W21|1|5|U|380
4W21|1|5|U|381
4W21|1|5|G|382
4W21|1|5|A|383
4W21|1|5|A|384
4W21|1|5|A|385
4W21|1|5|A|386
4W21|1|5|G|387
*
4W21|1|5|C|414
4W21|1|5|G|415
*
4W21|1|8|C|19
4W21|1|8|A|20

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains