J3_4W21_016

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

4W21|1|5|C|2441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W21_016 not in the Motif Atlas

Geometric match to J3_8P9A_055

Geometric discrepancy: 0.1674

The information below is about J3_8P9A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

4W21|1|5|U|2440
4W21|1|5|C|2441
4W21|1|5|G|2442
4W21|1|5|G|2443
4W21|1|5|U|2444
4W21|1|5|C|2445
*
4W21|1|5|G|2515
4W21|1|5|G|2516
4W21|1|5|A|2517
4W21|1|5|G|2518
4W21|1|5|U|2519
*
4W21|1|5|A|2536
4W21|1|5|A|2537

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA